http://reap.ecoinformatics.org/ REAP-Wiki - REAP Content Developement en-us http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20100301 uid=barseghian,o=NCEAS created this page on Tue Mar 09 12:46:24 PST 2010:<br /><hr /><br /><b>Mar 01, 2010</b><br /> <b>Participants:</b> Altintas, Barseghian, Crawl, Gallagher, Schildhauer, Schultz, Wang <br /> <p> <ul> <li> trip to ISI (SPAN) </li> <ul> <li> Dan and Derik to visit ISI, setup gumstix with SPAN software, test against our loggers, email out report </li> <li> Mark and Matt to get in contact w/ Terry re: mou </li> </ul> </ul> </p><p> <ul> <li> Eng View </li> <ul> <li> during next REAP meet, let's divide up Engineering View tasks as listed in <a class="external" href="http://bugzilla.ecoinformatics.org/buglist.cgi?query_format=advanced&bug_status=NEW&bug_status=ASSIGNED&bug_status=REOPENED&product=REAP">bugzilla</a><img class="outlink" src="http://reap.ecoinformatics.org/images/out.png" alt="" />, and shown in architecture diagram at the bottom of <a class="external" href="https://kepler-project.org/developers/incubation/kepler-engineering-view-for-reap/engineering-view-plans">this page</a><img class="outlink" src="http://reap.ecoinformatics.org/images/out.png" alt="" />. </li> <li> invite Manish, Debi, Jing </li> </ul> </ul> </p><p> <ul> <li> James </li> <ul> <li> crawler/metacat discussion. </li> <li> Peter wants to to be able to search on resolution as well. </li> <li> Matt: Debi may be able to help with the search GUI </li> </ul> </ul> </p><p> <ul> <li> Jianwu </li> <ul> <li> have made a new 64bit library for Matlab, waiting to hear from Peter that it works </li> <li> something changed with ecogrid and the master-slave is having compilation issues, working on these bugs </li> </ul> </ul> </p><p> <ul> <li> no cost extension </li> <ul> <li> Matt: filed no cost extension, our end is now May 31st, 2011. MSI to extend subcontacts, if this doesn't happen, let Matt know </li> </ul> </ul> </p><p> </p> 1 2010-03-09T20:46:24Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20100301 http://reap.ecoinformatics.org/Wiki.jsp?page=MeetingAgendasAndNotes uid=barseghian,o=NCEAS changed this page on Tue Mar 09 12:13:45 PST 2010:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">Line 4 was replaced by line 4</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- |Conference call| Mar 01, 2010 12:00 PT|</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ |Conference call| Mar 15, 2010 12:00 PT|</td></tr> <tr><td class="diff">Lines 7-10 were replaced by lines 7-11</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- |Conference call| |Feb 08, 2009|[Notes|ConferenceCallNotes2010-02-08]</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- |Conference call| |Feb 01, 2009|[Notes|ConferenceCallNotes2010-02-01]</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- |Conference call| |Jan 25, 2009|[Notes|ConferenceCallNotes2010-01-25]</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- |Conference call| |Jan 11, 2009|[Notes|ConferenceCallNotes2010-01-11]</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ |Conference call| |Mar 01, 2010|[Notes|ConferenceCallNotes2010-03-01]</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ |Conference call| |Feb 08, 2010|[Notes|ConferenceCallNotes2010-02-08]</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ |Conference call| |Feb 01, 2010|[Notes|ConferenceCallNotes2010-02-01]</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ |Conference call| |Jan 25, 2010|[Notes|ConferenceCallNotes2010-01-25]</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ |Conference call| |Jan 11, 2010|[Notes|ConferenceCallNotes2010-01-11]</td></tr> </table> 124 http://reap.ecoinformatics.org/Diff.jsp?page=MeetingAgendasAndNotes&r1=-1 2010-03-09T20:13:45Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=MeetingAgendasAndNotes http://reap.ecoinformatics.org/Wiki.jsp?page=Ocean_use_case_searching uid=gallagher,o=unaffiliated changed this page on Mon Mar 01 13:07:36 PST 2010:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">At line 30 added 10 lines.</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ !!Search Parameters</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ This search sub-system is driven by the Ocean Use case, in it's second form, and so the parameters are derived from that. However, these are general search parameters applicable to just about any search involving satellite data. The parameters are:</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ * Space (Latitude and Longitude)</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ * Time (Really date & time)</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ ** Question: But we should include things like 'day' or night' to accommodate finding only images from the day or night?</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ * Resolution (i.e., what is the area in km^2 covered by a pixel)</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ * Parameter (Sea Surface Temperature, Wind vectors, etc.)</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+</td></tr> </table> 10 http://reap.ecoinformatics.org/Diff.jsp?page=Ocean_use_case_searching&r1=-1 2010-03-01T21:07:36Z uid=gallagher,o=unaffiliated http://reap.ecoinformatics.org/PageInfo.jsp?page=Ocean_use_case_searching http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20100125 uid=barseghian,o=NCEAS created this page on Mon Jan 25 12:38:30 PST 2010:<br /><hr /><br /><b>Jan 25, 2010</b><br /> <b>Participants:</b> Altintas, Barseghian, Crawl, Gallagher, Ludäscher, Riddle, Schultz, Wang <br /> <p> </p><p> <ul> <li> ludäscher - will check w/ ilkay and matt about meeting tomorrow </li> </ul> </p><p> <ul> <li> barseghian - working on 2.0 bugs </li> </ul> </p><p> <ul> <li> crawl - building and image and getting java onto gumstix. next is DataTurbine, and testing. </li> </ul> </p><p> <ul> <li> gallagher - </li> <ul> <li> looking at metacat and postgres. </li> <li> want to get metacat crawling hyrax, reading in xml hyrax spits out. looking at metacat java api </li> <li> could think about tpac crawler, but nathan has written a crawler and it would be nice to use it and keep things simpler/number of different softwares low </li> </ul> </ul> </p><p> <ul> <li> riddle - working on 2.0 bugs -- actor repository upload tracking bug, and dependencies. trying to get in contact with daigle. </li> </ul> </p><p> <ul> <li> schultz - working on 2.0 bugs. </li> </ul> </p> 1 2010-01-25T20:38:30Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20100125 http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20100111 uid=barseghian,o=NCEAS changed this page on Mon Jan 11 17:39:33 PST 2010:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">Line 13 was replaced by line 13</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- *** also trying to get master-slave to work in the current configuration, and need to tet master-slave with multiple slaves, etc</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ *** also trying to get master-slave to work in the current configuration, and need to test master-slave with multiple slaves, etc.</td></tr> </table> 3 http://reap.ecoinformatics.org/Diff.jsp?page=ConferenceCallNotes20100111&r1=-1 2010-01-12T01:39:33Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20100111 http://reap.ecoinformatics.org/Wiki.jsp?page=Publications uid=jianwu,o=SDSC changed this page on Mon Dec 07 17:00:09 PST 2009:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">Line 3 was replaced by line 3</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- *Wang, J; Crawl, D; Altintas, I; &quot;Kepler + Hadoop : A General Architecture Facilitating Data-Intensive Applications in Scientific Workflow Systems&quot;, In Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science (WORKS09) at Supercomputing 2009 (SC2009) Conference.</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ *Wang, J; Crawl, D; Altintas, I, &quot;Kepler + Hadoop : A General Architecture Facilitating Data-Intensive Applications in Scientific Workflow Systems&quot;, In Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science (WORKS09) at Supercomputing 2009 (SC2009) Conference.</td></tr> <tr><td class="diff">Lines 7-9 were replaced by lines 7-10</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- *[Kepler|http://kepler-project.org]</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- *[Kepler Component Repository|http://library.kepler-project.org]</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- *[Ptolemy|http://ptolemy.eecs.berkeley.edu]</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ *Barseghian, D; Altintas, I; Jones, M, &quot;Accessing and Using Sensor Data within the Kepler Scientific Workflow System&quot;, Proceedings of Environmental Information Management 2008, p. , vol. , (2008).</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ *Crawl, D; Altintas, I., &quot;A Provenance-Based Fault Tolerance Mechanism for Scientific Workflows&quot;, Proceedings of IPAW 2008, p. , vol. ,(2008).</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ *Rueda, C; Gertz, M, &quot;Real-time Integration of Geospatial Raster and Point Data Streams&quot;, Proceedings of the 20th Intl. Conf. on Scientific and Statistical Data Management, p. , vol. , (2008).</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ *Wang, J; Altintas, I; Berkley, C; Gilbert, L; Jones, M, &quot;A High-Level Distributed Execution Framework for Scientific Workflows&quot;. In Proceedings of workshop SWBES08: Challenging Issues in Workflow Applications, 4th IEEE International Conference on e-Science (e-Science 2008), pages 634-639.</td></tr> </table> 3 http://reap.ecoinformatics.org/Diff.jsp?page=Publications&r1=-1 2009-12-08T01:00:09Z uid=jianwu,o=SDSC http://reap.ecoinformatics.org/PageInfo.jsp?page=Publications http://reap.ecoinformatics.org/Wiki.jsp?page=LeftMenu uid=jianwu,o=SDSC changed this page on Mon Dec 07 16:40:44 PST 2009:<br /><hr /><br /> 13 http://reap.ecoinformatics.org/Diff.jsp?page=LeftMenu&r1=-1 2009-12-08T00:40:44Z uid=jianwu,o=SDSC http://reap.ecoinformatics.org/PageInfo.jsp?page=LeftMenu http://reap.ecoinformatics.org/Wiki.jsp?page=People uid=jianwu,o=SDSC changed this page on Mon Dec 07 16:36:57 PST 2009:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">Line 8 was replaced by lines 8-9</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- |Chaitan Baru |(baru at sdsc.edu) |University of California, San Diego</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ |Chaitan Baru |(baru at sdsc.edu) |University of California, San Diego</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ |Jianwu Wang |(jianwu at sdsc.edu) |University of California, San Diego</td></tr> </table> 11 http://reap.ecoinformatics.org/Diff.jsp?page=People&r1=-1 2009-12-08T00:36:57Z uid=jianwu,o=SDSC http://reap.ecoinformatics.org/PageInfo.jsp?page=People http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20091123 uid=barseghian,o=NCEAS changed this page on Mon Dec 07 13:07:01 PST 2009:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">At line 14 added 2 lines.</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ * Altintas: interviewing candidates</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+</td></tr> </table> 2 http://reap.ecoinformatics.org/Diff.jsp?page=ConferenceCallNotes20091123&r1=-1 2009-12-07T21:07:01Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20091123 http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20091026 uid=barseghian,o=NCEAS created this page on Thu Nov 12 12:18:17 PST 2009:<br /><hr /><br /><b>Oct 26, 2009</b><br /> <b>Participants:</b> Altintas, Barseghian, Crawl, Cornillon, Jones, Ludäscher, Riddle, Schultz, Wang <br /> <p> <ul> <li> discussion with Peter of new SST ocean usecase - front detection </li> <ul> <li> conclusion: Peter work w/ Ilkay and Jianwu. 1) try to keplerize process, 2) then look into mapreduce </li> </ul> </ul> </p><p> <ul> <li> tagging discussion </li> </ul> </p><p> <ul> <li> component library / saving and searching workflows discussion </li> <ul> <li> search in component library is now working and is fast. </li> <li> now attaching string attribs to actors that allow module-dependency specification. </li> <ul> <li> if a KAR is found that cannot be dealt with, it's just skipped for now. TODO: show a broken icon </li> <li> TODO: aaron, write up a paragraph explaining you actor dependency work and have a discussion w/ david et al </li> </ul> </ul> </ul> </p><p> <ul> <li> OPeNDAP search </li> <ul> <li> TODO: matt, work on GUI mockups w/ James while NDP is away </li> </ul> </ul> </p><p> <ul> <li> engineering view discussion </li> <ul> <li> started work on UI parts, designing drag-and-drop of specificaiton </li> </ul> </ul> </p><p> <ul> <li> SPAN call to take place Nov 2 at 11am </li> </ul> </p> 1 2009-11-12T20:18:17Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20091026 http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20091102 uid=barseghian,o=NCEAS created this page on Thu Nov 12 11:57:12 PST 2009:<br /><hr /><br /><b>Nov 02, 2009</b><br /> <b>Participants:</b> Barseghian, Crawl, Gallagher, Jones, Ludäscher, Riddle, Schultz, Wang <br /> <p> <ul> <li> Barseghian </li> <ul> <li> working on fixing serialization of tagging and errors in WorkflowRuns </li> <li> TODO send SPAN group the REAP paper </li> </ul> </ul> </p><p> <ul> <li> Riddle </li> <ul> <li> tagging update </li> </ul> </ul> </p><p> <ul> <li> Schultz </li> <ul> <li> working on startup time, actor metadata issues - currently moml parsing is happening more than necessary </li> <li>TODO update bugs, close those that are finished, synopsis of ones that aren't </li> </ul> </ul> </p><p> <ul> <li> Wang </li> <ul> <li> waiting for Peter's program and data. </li> <li> updating mapreduce actor to make it easier to use </li> <li> security issues for master-slave and mapreduce need to be addressed before shipping, will ship after 2.0 </li> <li>TODO look at currently filed master-slave bugs </li> </ul> </ul> </p><p> <ul> <li> Gallagher </li> <ul> <li> Nathan still away, waiting for Matt on UI stuff </li> </ul> </ul> </p> 1 2009-11-12T19:57:12Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20091102 http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20091109 uid=barseghian,o=NCEAS changed this page on Thu Nov 12 11:48:43 PST 2009:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">Line 1 was replaced by line 1</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- __Oct 12, 2009__\\</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ __Nov 09, 2009__\\</td></tr> </table> 3 http://reap.ecoinformatics.org/Diff.jsp?page=ConferenceCallNotes20091109&r1=-1 2009-11-12T19:48:43Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20091109 http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20091012 uid=barseghian,o=NCEAS created this page on Mon Oct 12 14:19:04 PDT 2009:<br /><hr /><br /><b>Oct 12, 2009</b><br /> <b>Participants:</b> Barseghian, Gallagher, Jones, Riddle, Schultz, Wang <br /> <p> <ul> <li> potential new ocean usecase </li> <ul> <li> Jianwu - TODO ask Ilkay to send email with description of potential usecase, and how the required development would benefit REAP. </li> <li> Matt: REAP has a lot to do in remaining time, are the benefits of this new usecase large enough? </li> </ul> </ul> </p><p> <ul> <li> component search / tags search in components pane and wrm </li> <ul> <li> Aaron: will work on gettign search wrapped up, and then move onto wrp suite speed issues </li> <li> Derik - need to implement tags search in wrm/provenance. Will do my best to build ontop of existing search/aaron's work. </li> </ul> </ul> </p><p> <ul> <li> ocean usecase data search </li> <ul> <li> James and Matt will work on a plan and screenshots for how search/search UI/spatial raster searching will work for these datasets </li> <li> James may setup own production metacat for search these datasets with kepler 2.0 </li> </ul> </ul> </p><p> <ul> <li> module publishing </li> <ul> <li> Sean - TODO try again to get in contact w/ David, see about status of publishing. We need to determine how we will publish our modules, and try it; we need to try loading our modules at runtime instead of build time </li> </ul> </ul> </p><p> <ul> <li> distributed computing </li> <ul> <li> Jianwu working on mapreduce w/ parviez's usecase, and comparing w/ master-slave </li> <ul> <li> TODO: email paper around about mapreduce actor </li> </ul> </ul> </ul> </p><p> <ul> <li> Next call 26th. Discuss potential ocean usecase w/ Ilkay, Peter and Matt </li> </ul> </p> 1 2009-10-12T21:19:04Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20091012 http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20091005 uid=crawl,o=SDSC changed this page on Mon Oct 05 16:23:50 PDT 2009:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">Line 15 was replaced by line 15</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- ** Ilkay suggests scenario diagrams to show we'll use these interfaces to solve our usecases</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ ** Ilkay suggests sequence diagrams to show we'll use these interfaces to solve our usecases</td></tr> </table> 2 http://reap.ecoinformatics.org/Diff.jsp?page=ConferenceCallNotes20091005&r1=-1 2009-10-05T23:23:50Z uid=crawl,o=SDSC http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20091005 http://reap.ecoinformatics.org/Wiki.jsp?page=ConferenceCallNotes20090921 uid=barseghian,o=NCEAS changed this page on Tue Sep 22 11:45:55 PDT 2009:<br /><hr /><br /><table class="diff" border="0" cellspacing="0" cellpadding="0"> <tr><td class="diff">Line 9 was replaced by line 9</td></tr> <tr><td bgcolor="#FF9933" class="diffrem">- * Peter: have talked at length w/ Ilkay and Dan about new usecase, need to talk w/ Matt et al to see if fits REAP scope</td></tr> <tr><td bgcolor="#99FF99" class="diffadd">+ ** Peter: have talked at length w/ Ilkay and Dan about new usecase, need to talk w/ Matt et al to see if fits REAP scope</td></tr> </table> 2 http://reap.ecoinformatics.org/Diff.jsp?page=ConferenceCallNotes20090921&r1=-1 2009-09-22T18:45:55Z uid=barseghian,o=NCEAS http://reap.ecoinformatics.org/PageInfo.jsp?page=ConferenceCallNotes20090921 Search this Wiki query http://reap.ecoinformatics.org/Search.jsp